IL_6HD7_014

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_014 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2095

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6HD7|1|1|U|411
6HD7|1|1|G|412
*
6HD7|1|4|C|11
6HD7|1|4|A|12
6HD7|1|4|A|13

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Chain 4

5.8S rRNA

Nearby chains

Chain R

60S ribosomal protein L17-A