IL_6HD7_109

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6HD7|1|1|G|2945, 6HD7|1|1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_109 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1804

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6HD7|1|1|C|2879
6HD7|1|1|U|2880
6HD7|1|1|C|2881
*
6HD7|1|1|G|2943
6HD7|1|1|U|2944
6HD7|1|1|G|2945
6HD7|1|1|A|2946
6HD7|1|1|G|2947

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain X

60S ribosomal protein L23-A