IL_6HD7_110
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CU*AACG
- Length
- 6 nucleotides
- Bulged bases
- 6HD7|1|1|A|2941, 6HD7|1|1|C|2942
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HD7_110 not in the Motif Atlas
- Homologous match to IL_8C3A_117
- Geometric discrepancy: 0.1331
- The information below is about IL_8C3A_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24807.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6HD7|1|1|C|2881
6HD7|1|1|U|2882
*
6HD7|1|1|A|2940
6HD7|1|1|A|2941
6HD7|1|1|C|2942
6HD7|1|1|G|2943
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain F
- 60S ribosomal protein L3
- Chain Q
- 60S ribosomal protein L16-A
- Chain X
- 60S ribosomal protein L23-A
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