IL_6HD7_112

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

6HD7|1|1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_112 not in the Motif Atlas

Geometric match to IL_4V9F_089

Geometric discrepancy: 0.1875

The information below is about IL_4V9F_089

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

6HD7|1|1|U|2891
6HD7|1|1|A|2892
*
6HD7|1|1|U|2909
6HD7|1|1|A|2910
6HD7|1|1|A|2911
6HD7|1|1|G|2912

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain Q

60S ribosomal protein L16-A

Chain o

Ubiquitin-60S ribosomal protein L40