IL_6HD7_114

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6HD7|1|1|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_114 not in the Motif Atlas

Geometric match to IL_8GLP_097

Geometric discrepancy: 0.3127

The information below is about IL_8GLP_097

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

6HD7|1|1|C|2960
6HD7|1|1|G|2961
*
6HD7|1|1|C|2970
6HD7|1|1|A|2971
6HD7|1|1|G|2972

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain B

Transfer RNA; tRNA

Chain E

60S ribosomal protein L2-A

Chain s

60S ribosomal protein L10