3D structure

PDB id
6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUAUCA*UCUUAUG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HHQ_072 not in the Motif Atlas
Homologous match to IL_5TBW_072
Geometric discrepancy: 0.0551
The information below is about IL_5TBW_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_39753.2
Basepair signature
cWW-L-R-tWH-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6HHQ|1|1|U|1702
6HHQ|1|1|U|1703
6HHQ|1|1|A|1704
6HHQ|1|1|U|1705
6HHQ|1|1|C|1706
6HHQ|1|1|A|1707
*
6HHQ|1|1|U|1737
6HHQ|1|1|C|1738
6HHQ|1|1|U|1739
6HHQ|1|1|U|1740
6HHQ|1|1|A|1741
6HHQ|1|1|U|1742
6HHQ|1|1|G|1743

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AH
60S ribosomal protein L34-A

Coloring options:


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