IL_6HHQ_129
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUG*CUUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_129 not in the Motif Atlas
- Homologous match to IL_8C3A_135
- Geometric discrepancy: 0.2164
- The information below is about IL_8C3A_135
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6HHQ|1|1|U|3300
6HHQ|1|1|U|3301
6HHQ|1|1|U|3302
6HHQ|1|1|G|3303
*
6HHQ|1|1|C|3311
6HHQ|1|1|U|3312
6HHQ|1|1|U|3313
6HHQ|1|1|A|3314
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L31-A
- Chain k
- 60S ribosomal protein L3
- Chain x
- 60S ribosomal protein L17-A
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