IL_6HHQ_148
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 6HHQ|1|A|A|46, 6HHQ|1|A|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_148 not in the Motif Atlas
- Geometric match to IL_4V88_387
- Geometric discrepancy: 0.0749
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6HHQ|1|A|G|42
6HHQ|1|A|A|43
6HHQ|1|A|U|44
6HHQ|1|A|U|45
6HHQ|1|A|A|46
6HHQ|1|A|A|47
6HHQ|1|A|G|48
*
6HHQ|1|A|C|431
6HHQ|1|A|G|432
6HHQ|1|A|C|433
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S8-A
- Chain Y
- 40S ribosomal protein S23-A
Coloring options: