3D structure

PDB id
6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
6HHQ|1|A|U|170
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HHQ_155 not in the Motif Atlas
Geometric match to IL_4V88_394
Geometric discrepancy: 0.093
The information below is about IL_4V88_394
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.3
Basepair signature
cWW-cWW-tWH-tWH-tHW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

6HHQ|1|A|G|143
6HHQ|1|A|U|144
6HHQ|1|A|A|145
6HHQ|1|A|U|146
6HHQ|1|A|A|147
6HHQ|1|A|A|148
6HHQ|1|A|C|149
*
6HHQ|1|A|G|165
6HHQ|1|A|C|166
6HHQ|1|A|U|167
6HHQ|1|A|A|168
6HHQ|1|A|A|169
6HHQ|1|A|U|170
6HHQ|1|A|A|171
6HHQ|1|A|C|172

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain 7
60S ribosomal protein L24-A
Chain H
40S ribosomal protein S6-A
Chain Z
40S ribosomal protein S24-A

Coloring options:


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