IL_6HHQ_167

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_167 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.1822

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6HHQ|1|A|C|411
6HHQ|1|A|A|412
6HHQ|1|A|U|413
*
6HHQ|1|A|A|420
6HHQ|1|A|A|421
6HHQ|1|A|G|422

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain H

40S ribosomal protein S6-A