IL_6HHQ_196
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_196 not in the Motif Atlas
- Geometric match to IL_4V88_440
- Geometric discrepancy: 0.0776
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6HHQ|1|A|G|1111
6HHQ|1|A|G|1112
6HHQ|1|A|A|1113
6HHQ|1|A|G|1114
6HHQ|1|A|U|1115
6HHQ|1|A|A|1116
6HHQ|1|A|U|1117
6HHQ|1|A|G|1118
*
6HHQ|1|A|U|1129
6HHQ|1|A|G|1130
6HHQ|1|A|A|1131
6HHQ|1|A|A|1132
6HHQ|1|A|A|1133
6HHQ|1|A|C|1134
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 60S ribosomal protein L41-B
- Chain Y
- 40S ribosomal protein S23-A
Coloring options: