IL_6HHQ_219

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6HHQ|1|A|C|1637, 6HHQ|1|A|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_219 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.0994

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6HHQ|1|A|C|1636
6HHQ|1|A|C|1637
6HHQ|1|A|G|1638
*
6HHQ|1|A|C|1764
6HHQ|1|A|A|1765
6HHQ|1|A|A|1766
6HHQ|1|A|G|1767

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain b

40S ribosomal protein S26-B

Chain i

Suppressor protein STM1