IL_6HHQ_240
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGGG*UUCUUUGUA
- Length
- 14 nucleotides
- Bulged bases
- 6HHQ|1|AR|U|252
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_240 not in the Motif Atlas
- Homologous match to IL_8P9A_239
- Geometric discrepancy: 0.1791
- The information below is about IL_8P9A_239
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13358.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
6HHQ|1|AR|U|169
6HHQ|1|AR|G|170
6HHQ|1|AR|G|171
6HHQ|1|AR|G|172
6HHQ|1|AR|G|173
*
6HHQ|1|AR|U|245
6HHQ|1|AR|U|246
6HHQ|1|AR|C|247
6HHQ|1|AR|U|248
6HHQ|1|AR|U|249
6HHQ|1|AR|U|250
6HHQ|1|AR|G|251
6HHQ|1|AR|U|252
6HHQ|1|AR|A|253
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain t
- 60S ribosomal protein L13-A
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