3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGGGG*UUCUUUGUA
Length
14 nucleotides
Bulged bases
8P9A|1|AR|U|252
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_13358.1
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
1

Unit IDs

8P9A|1|AR|U|169
8P9A|1|AR|G|170
8P9A|1|AR|G|171
8P9A|1|AR|G|172
8P9A|1|AR|G|173
*
8P9A|1|AR|U|245
8P9A|1|AR|U|246
8P9A|1|AR|C|247
8P9A|1|AR|U|248
8P9A|1|AR|U|249
8P9A|1|AR|U|250
8P9A|1|AR|G|251
8P9A|1|AR|U|252
8P9A|1|AR|A|253

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain CJ
60S ribosomal protein L8-A
Chain CN
60S ribosomal protein L13-A
Chain DJ
60S ribosomal protein L35-A
Chain t
60S ribosomal protein L13-A

Coloring options:

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