IL_8P9A_239

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGGG*UUCUUUGUA

Length

14 nucleotides

Bulged bases

8P9A|1|AR|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13358.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8P9A|1|AR|U|169
8P9A|1|AR|G|170
8P9A|1|AR|G|171
8P9A|1|AR|G|172
8P9A|1|AR|G|173
*
8P9A|1|AR|U|245
8P9A|1|AR|U|246
8P9A|1|AR|C|247
8P9A|1|AR|U|248
8P9A|1|AR|U|249
8P9A|1|AR|U|250
8P9A|1|AR|G|251
8P9A|1|AR|U|252
8P9A|1|AR|A|253

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain CJ

60S ribosomal protein L8-A

Chain CN

60S ribosomal protein L13-A

Chain DJ

60S ribosomal protein L35-A

Chain t

60S ribosomal protein L13-A