IL_6HHQ_260

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_260 not in the Motif Atlas

Homologous match to IL_5TBW_030

Geometric discrepancy: 0.0695

The information below is about IL_5TBW_030

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6HHQ|1|AR|U|834
6HHQ|1|AR|G|835
6HHQ|1|AR|A|836
6HHQ|1|AR|A|837
6HHQ|1|AR|G|838
*
6HHQ|1|AR|U|855
6HHQ|1|AR|G|856
6HHQ|1|AR|G|857
6HHQ|1|AR|A|858
6HHQ|1|AR|G|859

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CT

60S ribosomal protein L19-A

Chain DR

60S ribosomal protein L43-A