IL_6HHQ_296

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6HHQ|1|AR|U|1629, 6HHQ|1|AR|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_296 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.1711

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6HHQ|1|AR|U|1627
6HHQ|1|AR|C|1628
6HHQ|1|AR|U|1629
6HHQ|1|AR|U|1630
6HHQ|1|AR|C|1631
*
6HHQ|1|AR|G|1811
6HHQ|1|AR|G|1812
6HHQ|1|AR|A|1813
6HHQ|1|AR|A|1814
6HHQ|1|AR|U|1815
6HHQ|1|AR|A|1816

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L27-A