IL_6HHQ_301

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_301 not in the Motif Atlas

Homologous match to IL_5TBW_071

Geometric discrepancy: 0.0729

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6HHQ|1|AR|U|1694
6HHQ|1|AR|U|1695
6HHQ|1|AR|A|1696
6HHQ|1|AR|A|1697
6HHQ|1|AR|C|1698
*
6HHQ|1|AR|G|1747
6HHQ|1|AR|G|1748
6HHQ|1|AR|A|1749
6HHQ|1|AR|A|1750
6HHQ|1|AR|G|1751
6HHQ|1|AR|A|1752

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DI

60S ribosomal protein L34-A

Chain DM

60S ribosomal protein L38