IL_6HHQ_319

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6HHQ|1|AR|A|2281, 6HHQ|1|AR|C|2287, 6HHQ|1|AR|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_319 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0638

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6HHQ|1|AR|C|2277
6HHQ|1|AR|C|2278
6HHQ|1|AR|A|2279
6HHQ|1|AR|A|2280
6HHQ|1|AR|A|2281
6HHQ|1|AR|U|2282
6HHQ|1|AR|G|2283
6HHQ|1|AR|C|2284
6HHQ|1|AR|C|2285
6HHQ|1|AR|U|2286
6HHQ|1|AR|C|2287
6HHQ|1|AR|G|2288
*
6HHQ|1|AR|C|2304
6HHQ|1|AR|G|2305
6HHQ|1|AR|C|2306
6HHQ|1|AR|G|2307

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-B

Chain sR

Small subunit ribosomal RNA; SSU rRNA