IL_6HHQ_326
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAU
- Length
- 39 nucleotides
- Bulged bases
- 6HHQ|1|AR|C|2539, 6HHQ|1|AR|U|2541, 6HHQ|1|AR|G|2549, 6HHQ|1|AR|U|2550, 6HHQ|1|AR|U|2551, 6HHQ|1|AR|C|2552, 6HHQ|1|AR|U|2553, 6HHQ|1|AR|A|2554, 6HHQ|1|AR|U|2558, 6HHQ|1|AR|U|2559, 6HHQ|1|AR|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_326 not in the Motif Atlas
- Geometric match to IL_5TBW_097
- Geometric discrepancy: 0.1876
- The information below is about IL_5TBW_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46461.1
- Basepair signature
- cWW-L-tHH-L-tHS-L-cWW-L-L-L-L-R-L-R-tSW-R-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
6HHQ|1|AR|A|2529
6HHQ|1|AR|G|2530
6HHQ|1|AR|C|2531
6HHQ|1|AR|U|2532
6HHQ|1|AR|G|2533
6HHQ|1|AR|G|2534
6HHQ|1|AR|A|2535
6HHQ|1|AR|A|2536
6HHQ|1|AR|U|2537
6HHQ|1|AR|U|2538
6HHQ|1|AR|C|2539
6HHQ|1|AR|A|2540
6HHQ|1|AR|U|2541
6HHQ|1|AR|U|2542
6HHQ|1|AR|U|2543
6HHQ|1|AR|U|2544
6HHQ|1|AR|C|2545
6HHQ|1|AR|C|2546
6HHQ|1|AR|A|2547
6HHQ|1|AR|C|2548
6HHQ|1|AR|G|2549
6HHQ|1|AR|U|2550
6HHQ|1|AR|U|2551
6HHQ|1|AR|C|2552
6HHQ|1|AR|U|2553
6HHQ|1|AR|A|2554
6HHQ|1|AR|G|2555
6HHQ|1|AR|C|2556
6HHQ|1|AR|A|2557
6HHQ|1|AR|U|2558
6HHQ|1|AR|U|2559
6HHQ|1|AR|C|2560
6HHQ|1|AR|A|2561
6HHQ|1|AR|A|2562
6HHQ|1|AR|G|2563
*
6HHQ|1|AR|U|2578
6HHQ|1|AR|G|2579
6HHQ|1|AR|A|2580
6HHQ|1|AR|U|2581
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CZ
- 60S ribosomal protein L25
- Chain DB
- 60S ribosomal protein L27-A
- Chain DE
- 60S ribosomal protein L30
- Chain DI
- 60S ribosomal protein L34-A
- Chain DR
- 60S ribosomal protein L43-A
- Chain s1
- 40S ribosomal protein S1-A
Coloring options: