IL_6HHQ_337

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6HHQ|1|AR|G|2945, 6HHQ|1|AR|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_337 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0727

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6HHQ|1|AR|C|2879
6HHQ|1|AR|U|2880
6HHQ|1|AR|C|2881
*
6HHQ|1|AR|G|2943
6HHQ|1|AR|U|2944
6HHQ|1|AR|G|2945
6HHQ|1|AR|A|2946
6HHQ|1|AR|G|2947

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CX

60S ribosomal protein L23-A