IL_6HHQ_350

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_350 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.1967

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HHQ|1|AR|C|3162
6HHQ|1|AR|A|3163
6HHQ|1|AR|C|3164
6HHQ|1|AR|A|3165
6HHQ|1|AR|C|3166
*
6HHQ|1|AR|G|3284
6HHQ|1|AR|C|3285
6HHQ|1|AR|G|3286
6HHQ|1|AR|U|3287
6HHQ|1|AR|G|3288

Current chains

Chain AR

25S ribosomal RNA

Nearby chains