IL_6HHQ_357

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_357 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1056

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6HHQ|1|AR|C|3235
6HHQ|1|AR|U|3236
6HHQ|1|AR|U|3237
6HHQ|1|AR|G|3238
*
6HHQ|1|AR|C|3249
6HHQ|1|AR|U|3250
6HHQ|1|AR|U|3251
6HHQ|1|AR|G|3252

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CO

60S ribosomal protein L14-A

Chain CQ

60S ribosomal protein L16-A