IL_6HHQ_373
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_373 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0465
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6HHQ|1|AT|A|44
6HHQ|1|AT|C|45
6HHQ|1|AT|G|46
6HHQ|1|AT|C|47
6HHQ|1|AT|A|48
6HHQ|1|AT|G|49
6HHQ|1|AT|C|50
6HHQ|1|AT|G|51
6HHQ|1|AT|A|52
6HHQ|1|AT|A|53
6HHQ|1|AT|A|54
6HHQ|1|AT|U|55
6HHQ|1|AT|G|56
6HHQ|1|AT|C|57
6HHQ|1|AT|G|58
6HHQ|1|AT|A|59
6HHQ|1|AT|U|60
6HHQ|1|AT|A|61
6HHQ|1|AT|C|62
6HHQ|1|AT|G|63
6HHQ|1|AT|U|64
*
6HHQ|1|AT|A|96
6HHQ|1|AT|A|97
6HHQ|1|AT|U|98
6HHQ|1|AT|C|99
6HHQ|1|AT|U|100
Current chains
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CZ
- 60S ribosomal protein L25
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DL
- 60S ribosomal protein L37-A
- Chain DN
- 60S ribosomal protein L39
Coloring options: