IL_6HHQ_386

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6HHQ|1|sR|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_386 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.0925

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6HHQ|1|sR|G|143
6HHQ|1|sR|U|144
6HHQ|1|sR|A|145
6HHQ|1|sR|U|146
6HHQ|1|sR|A|147
6HHQ|1|sR|A|148
6HHQ|1|sR|C|149
*
6HHQ|1|sR|G|165
6HHQ|1|sR|C|166
6HHQ|1|sR|U|167
6HHQ|1|sR|A|168
6HHQ|1|sR|A|169
6HHQ|1|sR|U|170
6HHQ|1|sR|A|171
6HHQ|1|sR|C|172

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A

Chain d4

40S ribosomal protein S24-A

Chain s6

40S ribosomal protein S6-A