IL_6HHQ_421

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGUC*GGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_421 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3402

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HHQ|1|sR|C|870
6HHQ|1|sR|G|871
6HHQ|1|sR|G|872
6HHQ|1|sR|U|873
6HHQ|1|sR|C|874
*
6HHQ|1|sR|G|953
6HHQ|1|sR|G|954
6HHQ|1|sR|A|955
6HHQ|1|sR|C|956
6HHQ|1|sR|G|957

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A