IL_6HHQ_430

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_430 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.056

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6HHQ|1|sR|G|1111
6HHQ|1|sR|G|1112
6HHQ|1|sR|A|1113
6HHQ|1|sR|G|1114
6HHQ|1|sR|U|1115
6HHQ|1|sR|A|1116
6HHQ|1|sR|U|1117
6HHQ|1|sR|G|1118
*
6HHQ|1|sR|U|1129
6HHQ|1|sR|G|1130
6HHQ|1|sR|A|1131
6HHQ|1|sR|A|1132
6HHQ|1|sR|A|1133
6HHQ|1|sR|C|1134

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain DP

60S ribosomal protein L41-B

Chain d3

40S ribosomal protein S23-A