IL_6HHQ_448
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_448 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.0589
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HHQ|1|sR|G|1480
6HHQ|1|sR|C|1481
6HHQ|1|sR|C|1482
6HHQ|1|sR|A|1483
6HHQ|1|sR|G|1484
6HHQ|1|sR|C|1485
6HHQ|1|sR|G|1486
6HHQ|1|sR|A|1487
*
6HHQ|1|sR|U|1519
6HHQ|1|sR|U|1520
6HHQ|1|sR|G|1521
6HHQ|1|sR|U|1522
6HHQ|1|sR|G|1523
6HHQ|1|sR|A|1524
6HHQ|1|sR|A|1525
6HHQ|1|sR|A|1526
6HHQ|1|sR|C|1527
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s3
- 40S ribosomal protein S3
- Chain s5
- 40S ribosomal protein S5
Coloring options: