IL_6HHQ_450

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_450 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.0678

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6HHQ|1|sR|C|1495
6HHQ|1|sR|U|1496
6HHQ|1|sR|U|1497
6HHQ|1|sR|G|1498
*
6HHQ|1|sR|C|1509
6HHQ|1|sR|U|1510
6HHQ|1|sR|U|1511
6HHQ|1|sR|G|1512

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c9

40S ribosomal protein S19-A

Chain d0

40S ribosomal protein S20