IL_6HHQ_465

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_465 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.2394

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6HHQ|1|1|C|163
6HHQ|1|1|A|164
6HHQ|1|1|A|165
6HHQ|1|1|C|166
*
6HHQ|1|1|G|256
6HHQ|1|1|U|257
6HHQ|1|1|G|258

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L35-A

Chain t

60S ribosomal protein L13-A