IL_6HHQ_469
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAC*GGA
- Length
- 8 nucleotides
- Bulged bases
- 6HHQ|1|1|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_469 not in the Motif Atlas
- Homologous match to IL_8P9A_290
- Geometric discrepancy: 0.1038
- The information below is about IL_8P9A_290
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
6HHQ|1|1|U|1501
6HHQ|1|1|C|1502
6HHQ|1|1|A|1503
6HHQ|1|1|A|1504
6HHQ|1|1|C|1505
*
6HHQ|1|1|G|1513
6HHQ|1|1|G|1514
6HHQ|1|1|A|1515
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AM
- 60S ribosomal protein L39
- Chain x
- 60S ribosomal protein L17-A
- Chain z
- 60S ribosomal protein L19-A
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