IL_6HHQ_490

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6HHQ|1|AR|U|1820, 6HHQ|1|AR|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_490 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.0927

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

6HHQ|1|AR|G|1623
6HHQ|1|AR|G|1624
*
6HHQ|1|AR|U|1819
6HHQ|1|AR|U|1820
6HHQ|1|AR|U|1821
6HHQ|1|AR|C|1822

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DI

60S ribosomal protein L34-A