IL_6HMA_031

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

ACGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_031 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5751

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HMA|1|A|A|920
6HMA|1|A|C|921
6HMA|1|A|G|922
6HMA|1|A|A|923
6HMA|1|A|G|924
*
6HMA|1|A|C|943
6HMA|1|A|G|944
6HMA|1|A|A|945
6HMA|1|A|A|946
6HMA|1|A|U|947

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16