IL_6HMA_036

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6HMA|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_036 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.086

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6HMA|1|A|U|1062
6HMA|1|A|U|1063
6HMA|1|A|A|1064
6HMA|1|A|A|1065
6HMA|1|A|G|1066
6HMA|1|A|U|1067
6HMA|1|A|G|1068
*
6HMA|1|A|C|1184
6HMA|1|A|U|1185
6HMA|1|A|A|1186
6HMA|1|A|A|1187
6HMA|1|A|A|1188

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain H

50S ribosomal protein L13