3D structure

PDB id
6HMA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
CUAAG*CGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HMA_047 not in the Motif Atlas
Homologous match to IL_4WF9_051
Geometric discrepancy: 0.1076
The information below is about IL_4WF9_051
Detailed Annotation
UAA/GAN
Broad Annotation
UAA/GAN
Motif group
IL_89021.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6HMA|1|A|C|1388
6HMA|1|A|U|1389
6HMA|1|A|A|1390
6HMA|1|A|A|1391
6HMA|1|A|G|1392
*
6HMA|1|A|C|1413
6HMA|1|A|G|1414
6HMA|1|A|A|1415
6HMA|1|A|U|1416
6HMA|1|A|G|1417

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain C
50S ribosomal protein L2

Coloring options:


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