IL_6HMA_051

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUAGG*CACAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_051 not in the Motif Atlas

Homologous match to IL_4WF9_122

Geometric discrepancy: 0.2548

The information below is about IL_4WF9_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67780.1

Basepair signature

cWW-cSH-L-R-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6HMA|1|A|G|1476
6HMA|1|A|U|1477
6HMA|1|A|A|1478
6HMA|1|A|G|1479
6HMA|1|A|G|1480
*
6HMA|1|A|C|1604
6HMA|1|A|A|1605
6HMA|1|A|C|1606
6HMA|1|A|A|1607
6HMA|1|A|C|1608

Current chains

Chain A

23S ribosomal RNA

Nearby chains