IL_6HMA_054

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAAGC*GUGAUGG

Length

13 nucleotides

Bulged bases

6HMA|1|A|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_054 not in the Motif Atlas

Geometric match to IL_4WF9_058

Geometric discrepancy: 0.1715

The information below is about IL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88190.1

Basepair signature

cWW-L-R-tHS-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6HMA|1|A|C|1511
6HMA|1|A|U|1512
6HMA|1|A|A|1513
6HMA|1|A|A|1514
6HMA|1|A|G|1515
6HMA|1|A|C|1516
*
6HMA|1|A|G|1564
6HMA|1|A|U|1565
6HMA|1|A|G|1566
6HMA|1|A|A|1567
6HMA|1|A|U|1568
6HMA|1|A|G|1569
6HMA|1|A|G|1570

Current chains

Chain A

23S ribosomal RNA

Nearby chains