IL_6HMA_061

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6HMA|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_061 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0785

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6HMA|1|A|C|1730
6HMA|1|A|G|1731
6HMA|1|A|U|1732
6HMA|1|A|A|1733
6HMA|1|A|A|1734
6HMA|1|A|C|1735
*
6HMA|1|A|G|1740
6HMA|1|A|G|1741
6HMA|1|A|A|1742
6HMA|1|A|G|1743
6HMA|1|A|A|1744
6HMA|1|A|A|1745
6HMA|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2