IL_6HMA_064

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

6HMA|1|A|U|1828, 6HMA|1|A|U|1843, 6HMA|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_064 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0972

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6HMA|1|A|U|1825
6HMA|1|A|G|1826
6HMA|1|A|C|1827
6HMA|1|A|U|1828
6HMA|1|A|A|1829
6HMA|1|A|A|1830
6HMA|1|A|A|1831
*
6HMA|1|A|U|1840
6HMA|1|A|G|1841
6HMA|1|A|A|1842
6HMA|1|A|U|1843
6HMA|1|A|G|1844
6HMA|1|A|U|1845
6HMA|1|A|A|1846
6HMA|1|A|U|1847
6HMA|1|A|A|1848

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2