IL_6HMA_071
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 6HMA|1|A|A|1965, 6HMA|1|A|U|1971
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HMA_071 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.159
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6HMA|1|A|C|1961
6HMA|1|A|G|1962
6HMA|1|A|A|1963
6HMA|1|A|A|1964
6HMA|1|A|A|1965
6HMA|1|A|5MU|1966
6HMA|1|A|U|1967
6HMA|1|A|C|1968
6HMA|1|A|C|1969
6HMA|1|A|U|1970
6HMA|1|A|U|1971
6HMA|1|A|G|1972
*
6HMA|1|A|C|1988
6HMA|1|A|C|1989
6HMA|1|A|C|1990
6HMA|1|A|G|1991
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: