IL_6HMA_079

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCUUGUACAGGAUAGGUAG*CUACCCAGC

Length

28 nucleotides

Bulged bases

6HMA|1|A|U|2138, 6HMA|1|A|G|2142, 6HMA|1|A|U|2145

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HMA|1|A|G|2133
6HMA|1|A|C|2134
6HMA|1|A|U|2135
6HMA|1|A|U|2136
6HMA|1|A|G|2137
6HMA|1|A|U|2138
6HMA|1|A|A|2139
6HMA|1|A|C|2140
6HMA|1|A|A|2141
6HMA|1|A|G|2142
6HMA|1|A|G|2143
6HMA|1|A|A|2144
6HMA|1|A|U|2145
6HMA|1|A|A|2146
6HMA|1|A|G|2147
6HMA|1|A|G|2148
6HMA|1|A|U|2149
6HMA|1|A|A|2150
6HMA|1|A|G|2151
*
6HMA|1|A|C|2201
6HMA|1|A|U|2202
6HMA|1|A|A|2203
6HMA|1|A|C|2204
6HMA|1|A|C|2205
6HMA|1|A|C|2206
6HMA|1|A|A|2208
6HMA|1|A|G|2209
6HMA|1|A|C|2210

Current chains

Chain A

23S ribosomal RNA

Nearby chains