IL_6HMA_092

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6HMA|1|A|G|2603, 6HMA|1|A|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_092 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0837

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6HMA|1|A|C|2537
6HMA|1|A|U|2538
6HMA|1|A|C|2539
*
6HMA|1|A|G|2601
6HMA|1|A|C|2602
6HMA|1|A|G|2603
6HMA|1|A|A|2604
6HMA|1|A|G|2605

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32