IL_6HRM_021
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 6HRM|1|1|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_021 not in the Motif Atlas
- Homologous match to IL_5J7L_022
- Geometric discrepancy: 0.1379
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HRM|1|1|G|446
6HRM|1|1|G|447
6HRM|1|1|A|448
6HRM|1|1|G|449
6HRM|1|1|G|450
*
6HRM|1|1|C|483
6HRM|1|1|G|484
6HRM|1|1|U|485
6HRM|1|1|U|486
6HRM|1|1|A|487
6HRM|1|1|C|488
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S4
- Chain u
- 30S ribosomal protein S16
Coloring options: