IL_6HRM_057
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 6HRM|1|1|A|4408, 6HRM|1|1|A|4409
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_057 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5322
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6HRM|1|1|G|1405
6HRM|1|1|U|1406
6HRM|1|1|5MC|1407
6HRM|1|1|A|1408
6HRM|1|1|C|1409
*
6HRM|1|1|G|4407
6HRM|1|1|A|4408
6HRM|1|1|A|4409
6HRM|1|1|G|4410
6HRM|1|1|U|4411
6HRM|1|1|C|4412
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain q
- 30S ribosomal protein S12
Coloring options: