IL_6HRM_067
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_067 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.0638
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|G|1530
6HRM|1|1|U|1531
6HRM|1|1|G|1532
6HRM|1|1|G|1533
6HRM|1|1|A|1534
6HRM|1|1|U|1535
6HRM|1|1|G|1536
*
6HRM|1|1|C|2016
6HRM|1|1|U|2017
6HRM|1|1|G|2018
6HRM|1|1|A|2019
6HRM|1|1|A|2020
6HRM|1|1|A|2021
6HRM|1|1|C|2022
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: