IL_6HRM_068

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6HRM|1|1|A|1949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_068 not in the Motif Atlas

Geometric match to IL_7RQB_002

Geometric discrepancy: 0.0864

The information below is about IL_7RQB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6HRM|1|1|G|1542
6HRM|1|1|C|1543
*
6HRM|1|1|G|1948
6HRM|1|1|A|1949
6HRM|1|1|C|1950

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20