IL_6HRM_072
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_072 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0719
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6HRM|1|1|G|1694
6HRM|1|1|G|1695
6HRM|1|1|A|1696
6HRM|1|1|A|1697
6HRM|1|1|C|1698
6HRM|1|1|U|1699
6HRM|1|1|G|1700
*
6HRM|1|1|C|1707
6HRM|1|1|U|1708
6HRM|1|1|A|1709
6HRM|1|1|A|1710
6HRM|1|1|G|1711
6HRM|1|1|U|1712
6HRM|1|1|A|1713
6HRM|1|1|C|1714
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L28
- Chain e
- 50S ribosomal protein L35
Coloring options: