IL_6HRM_075

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6HRM|1|1|G|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_075 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.2921

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6HRM|1|1|C|1780
6HRM|1|1|C|1781
6HRM|1|1|U|1782
6HRM|1|1|G|1783
6HRM|1|1|A|1784
6HRM|1|1|A|1785
6HRM|1|1|U|1786
6HRM|1|1|C|1787
*
6HRM|1|1|G|1865
6HRM|1|1|U|1866
6HRM|1|1|G|1867
6HRM|1|1|A|1868
6HRM|1|1|G|1869

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains