IL_6HRM_077
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 6HRM|1|1|A|2010, 6HRM|1|1|A|2014
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_077 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.081
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6HRM|1|1|G|1987
6HRM|1|1|A|1988
6HRM|1|1|A|1989
6HRM|1|1|C|1990
*
6HRM|1|1|G|2002
6HRM|1|1|A|2003
6HRM|1|1|G|2004
6HRM|1|1|U|2005
6HRM|1|1|G|2006
6HRM|1|1|A|2007
6HRM|1|1|A|2008
6HRM|1|1|A|2009
6HRM|1|1|A|2010
6HRM|1|1|A|2011
6HRM|1|1|G|2012
6HRM|1|1|A|2013
6HRM|1|1|A|2014
6HRM|1|1|C|2015
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: