IL_6HRM_095

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_095 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3981

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6HRM|1|1|G|2381
6HRM|1|1|C|2382
6HRM|1|1|A|2383
6HRM|1|1|A|2384
6HRM|1|1|G|2385
6HRM|1|1|G|2386
*
6HRM|1|1|C|2403
6HRM|1|1|C|2404
6HRM|1|1|A|2405
6HRM|1|1|A|2406
6HRM|1|1|C|2407
6HRM|1|1|C|2408

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16