3D structure

PDB id
6HRM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S d2d8 stapled ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
6HRM|1|1|U|2518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HRM_100 not in the Motif Atlas
Geometric match to IL_4WF9_038
Geometric discrepancy: 0.1109
The information below is about IL_4WF9_038
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_97561.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
129

Unit IDs

6HRM|1|1|G|2517
6HRM|1|1|U|2518
6HRM|1|1|C|2519
*
6HRM|1|1|G|2655
6HRM|1|1|C|2656

Current chains

Chain 1
stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20

Coloring options:


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